HL_6QNQ_072

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6QNQ|1|14|A|1614, 6QNQ|1|14|A|1616, 6QNQ|1|14|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_072 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1173

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6QNQ|1|14|C|1612
6QNQ|1|14|G|1613
6QNQ|1|14|A|1614
6QNQ|1|14|C|1615
6QNQ|1|14|A|1616
6QNQ|1|14|C|1617
6QNQ|1|14|A|1618
6QNQ|1|14|G|1619

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34