HL_6QNQ_109

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_109 not in the Motif Atlas

Homologous match to HL_6CZR_078

Geometric discrepancy: 0.115

The information below is about HL_6CZR_078

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6QNQ|1|1G|U|296
6QNQ|1|1G|G|297
6QNQ|1|1G|A|298
6QNQ|1|1G|G|299
6QNQ|1|1G|A|300
6QNQ|1|1G|G|301

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12

Chain 42

30S ribosomal protein S5

Chain 8A

30S ribosomal protein S17