HL_6QNQ_128

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6QNQ|1|1G|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_128 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3065

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6QNQ|1|1G|G|1134
6QNQ|1|1G|U|1135
6QNQ|1|1G|U|1136
6QNQ|1|1G|C|1137
6QNQ|1|1G|G|1138
6QNQ|1|1G|G|1139
6QNQ|1|1G|C|1140

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 82

30S ribosomal protein S9