HL_6QNQ_163

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6QNQ|1|1H|A|1067, 6QNQ|1|1H|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_163 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3895

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QNQ|1|1H|C|1064
6QNQ|1|1H|U|1065
6QNQ|1|1H|U|1066
6QNQ|1|1H|A|1067
6QNQ|1|1H|G|1068
6QNQ|1|1H|A|1069
6QNQ|1|1H|A|1070
6QNQ|1|1H|G|1071
6QNQ|1|1H|C|1072
6QNQ|1|1H|A|1073
6QNQ|1|1H|G|1074

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains