HL_6QNQ_186

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

6QNQ|1|1H|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_186 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.3521

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6QNQ|1|1H|C|2143
6QNQ|1|1H|U|2144
6QNQ|1|1H|C|2145
6QNQ|1|1H|C|2146
6QNQ|1|1H|G|2147
6QNQ|1|1H|G|2148

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11