HL_6QNQ_216

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

6QNQ|1|3K|C|16, 6QNQ|1|3K|G|19, 6QNQ|1|3K|G|20, 6QNQ|1|3K|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_216 not in the Motif Atlas

Homologous match to HL_4JYZ_001

Geometric discrepancy: 0.5851

The information below is about HL_4JYZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.4

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6QNQ|1|3K|G|12
6QNQ|1|3K|C|13
6QNQ|1|3K|A|14
6QNQ|1|3K|G|15
6QNQ|1|3K|C|16
6QNQ|1|3K|C|17
6QNQ|1|3K|U|18
6QNQ|1|3K|G|19
6QNQ|1|3K|G|20
6QNQ|1|3K|U|21
6QNQ|1|3K|A|22
6QNQ|1|3K|G|23
6QNQ|1|3K|C|24

Current chains

Chain 3K

E. coli tRNAfMet

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1