HL_6QUL_026

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6QUL|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_026 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1842

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|C|1064
6QUL|1|A|U|1065
6QUL|1|A|U|1066
6QUL|1|A|A|1067
6QUL|1|A|G|1068
6QUL|1|A|A|1069
6QUL|1|A|A|1070
6QUL|1|A|G|1071
6QUL|1|A|C|1072
6QUL|1|A|A|1073
6QUL|1|A|G|1074

Current chains

Chain A

23S rRNA

Nearby chains