HL_6QUL_034

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6QUL|1|A|A|1453, 6QUL|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_034 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.1351

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6QUL|1|A|C|1451
6QUL|1|A|G|1452
6QUL|1|A|A|1453
6QUL|1|A|C|1454
6QUL|1|A|G|1455
6QUL|1|A|G|1456
6QUL|1|A|U|1457
6QUL|1|A|U|1458
6QUL|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17