HL_6QUL_049

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6QUL|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_049 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1119

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6QUL|1|A|C|2248
6QUL|1|A|U|2249
6QUL|1|A|G|2250
6QUL|1|A|G|2251
6QUL|1|A|G|2252
6QUL|1|A|G|2253
6QUL|1|A|C|2254
6QUL|1|A|G|2255
6QUL|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

P-site fMet-tRNA(fMet)

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27