HL_6QUL_056

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_056 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.2457

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|A|2471
6QUL|1|A|G|2472
6QUL|1|A|U|2473
6QUL|1|A|U|2474
6QUL|1|A|C|2475
6QUL|1|A|A|2476
6QUL|1|A|U|2477
6QUL|1|A|A|2478
6QUL|1|A|U|2479

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36