HL_6QUL_064

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6QUL|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QUL_064 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0917

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6QUL|1|A|G|2819
6QUL|1|A|A|2820
6QUL|1|A|A|2821
6QUL|1|A|G|2822
6QUL|1|A|A|2823
6QUL|1|A|C|2824
6QUL|1|A|G|2825
6QUL|1|A|A|2826
6QUL|1|A|C|2827

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17