HL_6QZP_010

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3486

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6QZP|1|L5|C|367
6QZP|1|L5|C|368
6QZP|1|L5|G|369
6QZP|1|L5|U|370
6QZP|1|L5|A|371
6QZP|1|L5|A|372
6QZP|1|L5|OMG|373
6QZP|1|L5|G|374

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39