HL_6QZP_015

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

6QZP|1|L5|G|1178, 6QZP|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|G|1170
6QZP|1|L5|G|1171
6QZP|1|L5|C|1172
6QZP|1|L5|G|1173
6QZP|1|L5|G|1174
6QZP|1|L5|A|1175
6QZP|1|L5|C|1176
6QZP|1|L5|U|1177
6QZP|1|L5|G|1178
6QZP|1|L5|U|1179
6QZP|1|L5|C|1180
6QZP|1|L5|C|1181
6QZP|1|L5|C|1182
6QZP|1|L5|C|1183
6QZP|1|L5|A|1184
6QZP|1|L5|G|1185
6QZP|1|L5|U|1186
6QZP|1|L5|G|1187
6QZP|1|L5|C|1188
6QZP|1|L5|G|1189
6QZP|1|L5|C|1190
6QZP|1|L5|C|1191

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like