HL_6QZP_020

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6QZP|1|L5|U|1410, 6QZP|1|L5|C|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3174

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6QZP|1|L5|C|1405
6QZP|1|L5|G|1406
6QZP|1|L5|C|1407
6QZP|1|L5|G|1408
6QZP|1|L5|C|1409
6QZP|1|L5|U|1410
6QZP|1|L5|C|1411
6QZP|1|L5|G|1412

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Lb

60S ribosomal protein L29