HL_6QZP_029

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

6QZP|1|L5|G|1869

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_029 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0852

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6QZP|1|L5|G|1864
6QZP|1|L5|G|1865
6QZP|1|L5|UR3|1866
6QZP|1|L5|A|1867
6QZP|1|L5|A|1868
6QZP|1|L5|G|1869
6QZP|1|L5|C|1870

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29