Loop HL_6QZP

3D structure

PDB id: 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description: High-resolution cryo-EM structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
Length: 50 nucleotides
Bulged bases: 6QZP|1|L5|G|1975, 6QZP|1|L5|U|1980, 6QZP|1|L5|G|1981, 6QZP|1|L5|A|1984, 6QZP|1|L5|G|1988, 6QZP|1|L5|U|1997, 6QZP|1|L5|A|1998, 6QZP|1|L5|A|2009, 6QZP|1|L5|C|2011
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6QZP|1|L5|G|1969
6QZP|1|L5|A|1970
6QZP|1|L5|C|1971
6QZP|1|L5|G|1972
6QZP|1|L5|G|1973
6QZP|1|L5|U|1974
6QZP|1|L5|G|1975
6QZP|1|L5|G|1976
6QZP|1|L5|C|1977
6QZP|1|L5|C|1978
6QZP|1|L5|A|1979
6QZP|1|L5|U|1980
6QZP|1|L5|G|1981
6QZP|1|L5|G|1982
6QZP|1|L5|A|1983
6QZP|1|L5|A|1984
6QZP|1|L5|G|1985
6QZP|1|L5|U|1986
6QZP|1|L5|C|1987
6QZP|1|L5|G|1988
6QZP|1|L5|G|1989
6QZP|1|L5|A|1990
6QZP|1|L5|A|1991
6QZP|1|L5|U|1992
6QZP|1|L5|C|1993
6QZP|1|L5|C|1994
6QZP|1|L5|G|1995
6QZP|1|L5|C|1996
6QZP|1|L5|U|1997
6QZP|1|L5|A|1998
6QZP|1|L5|A|1999
6QZP|1|L5|G|2000
6QZP|1|L5|G|2001
6QZP|1|L5|A|2002
6QZP|1|L5|G|2003
6QZP|1|L5|U|2004
6QZP|1|L5|G|2005
6QZP|1|L5|U|2006
6QZP|1|L5|G|2007
6QZP|1|L5|U|2008
6QZP|1|L5|A|2009
6QZP|1|L5|A|2010
6QZP|1|L5|C|2011
6QZP|1|L5|A|2012
6QZP|1|L5|A|2013
6QZP|1|L5|C|2014
6QZP|1|L5|U|2015
6QZP|1|L5|C|2016
6QZP|1|L5|A|2017
6QZP|1|L5|C|2018

Current chains

Chain L5: 28S rRNA (3773-MER)

Nearby chains

Chain LI: 60S ribosomal protein L10-like
Chain Lm: Ubiquitin-60S ribosomal protein L40

HL_6QZP_031