Loop HL_6QZP

3D structure

PDB id: 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description: High-resolution cryo-EM structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU*U
Length: 124 nucleotides
Bulged bases: 6QZP|1|L5|A|3962, 6QZP|1|L5|A|3963, 6QZP|1|L5|G|3969, 6QZP|1|L5|G|3970, 6QZP|1|L5|G|4034, 6QZP|1|L5|G|4035, 6QZP|1|L5|C|4038, 6QZP|1|L5|U|4044, 6QZP|1|L5|A|4047, 6QZP|1|L5|A|4053, 6QZP|1|L5|C|4054, 6QZP|1|L5|U|4058, 6QZP|1|L5|G|4013, 6QZP|1|L5|G|4014, 6QZP|1|L5|C|4015, 6QZP|1|L5|G|4016, 6QZP|1|L5|G|4017, 6QZP|1|L5|G|4018, 6QZP|1|L5|G|4019, 6QZP|1|L5|U|4020, 6QZP|1|L5|C|4021, 6QZP|1|L5|C|4022, 6QZP|1|L5|G|4023, 6QZP|1|L5|C|4024, 6QZP|1|L5|C|4025, 6QZP|1|L5|G|4026, 6QZP|1|L5|G|4027, 6QZP|1|L5|C|4028, 6QZP|1|L5|C|4029, 6QZP|1|L5|C|4030, 6QZP|1|L5|U|4031, 6QZP|1|L5|G|4032, 6QZP|1|L5|C|4033, 6QZP|1|L5|G|4034, 6QZP|1|L5|G|4035, 6QZP|1|L5|C|4038, 6QZP|1|L5|U|4044, 6QZP|1|L5|G|4045, 6QZP|1|L5|A|4047, 6QZP|1|L5|U|4049, 6QZP|1|L5|A|4053, 6QZP|1|L5|C|4054, 6QZP|1|L5|U|4058
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6QZP|1|L5|A|3945
6QZP|1|L5|G|3946
6QZP|1|L5|A|3947
6QZP|1|L5|C|3948
6QZP|1|L5|A|3949
6QZP|1|L5|U|3950
6QZP|1|L5|G|3951
6QZP|1|L5|A|3952
6QZP|1|L5|G|3953
6QZP|1|L5|A|3954
6QZP|1|L5|G|3955
6QZP|1|L5|G|3956
6QZP|1|L5|U|3957
6QZP|1|L5|G|3958
6QZP|1|L5|U|3959
6QZP|1|L5|A|3960
6QZP|1|L5|G|3961
6QZP|1|L5|A|3962
6QZP|1|L5|A|3963
6QZP|1|L5|U|3964
6QZP|1|L5|A|3965
6QZP|1|L5|A|3966
6QZP|1|L5|G|3967
6QZP|1|L5|U|3968
6QZP|1|L5|G|3969
6QZP|1|L5|G|3970
6QZP|1|L5|G|3971
6QZP|1|L5|A|3972
6QZP|1|L5|G|3973
6QZP|1|L5|G|3974
6QZP|1|L5|C|3975
6QZP|1|L5|C|3976
6QZP|1|L5|C|3977
6QZP|1|L5|G|4034
6QZP|1|L5|G|4035
6QZP|1|L5|G|4036
6QZP|1|L5|C|4037
6QZP|1|L5|C|4038
6QZP|1|L5|G|4039
6QZP|1|L5|C|4040
6QZP|1|L5|C|4041
6QZP|1|L5|G|4042
6QZP|1|L5|G|4043
6QZP|1|L5|U|4044
6QZP|1|L5|G|4045
6QZP|1|L5|A|4046
6QZP|1|L5|A|4047
6QZP|1|L5|A|4048
6QZP|1|L5|U|4049
6QZP|1|L5|A|4050
6QZP|1|L5|C|4051
6QZP|1|L5|C|4052
6QZP|1|L5|A|4053
6QZP|1|L5|C|4054
6QZP|1|L5|U|4055
6QZP|1|L5|A|4056
6QZP|1|L5|C|4057
6QZP|1|L5|U|4058
6QZP|1|L5|C|4059
6QZP|1|L5|U|4060
6QZP|1|L5|G|4061
6QZP|1|L5|A|4062
6QZP|1|L5|U|4063
6QZP|1|L5|C|4064
6QZP|1|L5|G|4065
6QZP|1|L5|U|4066
6QZP|1|L5|U|4067
6QZP|1|L5|U|4068
6QZP|1|L5|G|4013
6QZP|1|L5|G|4014
6QZP|1|L5|C|4015
6QZP|1|L5|G|4016
6QZP|1|L5|G|4017
6QZP|1|L5|G|4018
6QZP|1|L5|G|4019
6QZP|1|L5|U|4020
6QZP|1|L5|C|4021
6QZP|1|L5|C|4022
6QZP|1|L5|G|4023
6QZP|1|L5|C|4024
6QZP|1|L5|C|4025
6QZP|1|L5|G|4026
6QZP|1|L5|G|4027
6QZP|1|L5|C|4028
6QZP|1|L5|C|4029
6QZP|1|L5|C|4030
6QZP|1|L5|U|4031
6QZP|1|L5|G|4032
6QZP|1|L5|C|4033
6QZP|1|L5|G|4034
6QZP|1|L5|G|4035
6QZP|1|L5|G|4036
6QZP|1|L5|C|4037
6QZP|1|L5|C|4038
6QZP|1|L5|G|4039
6QZP|1|L5|C|4040
6QZP|1|L5|C|4041
6QZP|1|L5|G|4042
6QZP|1|L5|G|4043
6QZP|1|L5|U|4044
6QZP|1|L5|G|4045
6QZP|1|L5|A|4046
6QZP|1|L5|A|4047
6QZP|1|L5|A|4048
6QZP|1|L5|U|4049
6QZP|1|L5|A|4050
6QZP|1|L5|C|4051
6QZP|1|L5|C|4052
6QZP|1|L5|A|4053
6QZP|1|L5|C|4054
6QZP|1|L5|U|4055
6QZP|1|L5|A|4056
6QZP|1|L5|C|4057
6QZP|1|L5|U|4058
6QZP|1|L5|C|4059
6QZP|1|L5|U|4060
6QZP|1|L5|G|4061
6QZP|1|L5|A|4062
6QZP|1|L5|U|4063
6QZP|1|L5|C|4064
6QZP|1|L5|G|4065
6QZP|1|L5|U|4066
6QZP|1|L5|U|4067
*
6QZP|1|L5|U|4068

Current chains

Chain L5: 28S rRNA (3773-MER)

Nearby chains

Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain S6: Transfer RNA; tRNA
Chain SB: 40S ribosomal protein S3a

HL_6QZP_056