HL_6QZP_060

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_060 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.171

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6QZP|1|L5|G|4250
6QZP|1|L5|A|4251
6QZP|1|L5|C|4252
6QZP|1|L5|A|4253
6QZP|1|L5|G|4254
6QZP|1|L5|A|4255
6QZP|1|L5|A|4256
6QZP|1|L5|A|4257
6QZP|1|L5|C|4258

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LJ

60S ribosomal protein L11