HL_6QZP_067

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG(PSU)UCA

Length

7 nucleotides

Bulged bases

6QZP|1|L5|G|4499

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_067 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.3358

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6QZP|1|L5|U|4497
6QZP|1|L5|U|4498
6QZP|1|L5|G|4499
6QZP|1|L5|PSU|4500
6QZP|1|L5|U|4501
6QZP|1|L5|C|4502
6QZP|1|L5|A|4503

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

60S ribosomal protein L3