HL_6QZP_071

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6QZP|1|L5|G|4694, 6QZP|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0847

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6QZP|1|L5|C|4688
6QZP|1|L5|U|4689
6QZP|1|L5|G|4690
6QZP|1|L5|A|4691
6QZP|1|L5|A|4692
6QZP|1|L5|C|4693
6QZP|1|L5|G|4694
6QZP|1|L5|C|4695
6QZP|1|L5|C|4696
6QZP|1|L5|U|4697
6QZP|1|L5|C|4698
6QZP|1|L5|U|4699
6QZP|1|L5|A|4700
6QZP|1|L5|A|4701
6QZP|1|L5|G|4702

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40