HL_6QZP_091

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6QZP|1|S2|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_091 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1618

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6QZP|1|S2|C|462
6QZP|1|S2|C|463
6QZP|1|S2|A|464
6QZP|1|S2|A|465
6QZP|1|S2|G|466
6QZP|1|S2|G|467

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6