HL_6QZP_097
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UG(PSU)(PSU)CAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6QZP|1|S2|G|821
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QZP_097 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.4028
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6QZP|1|S2|U|820
6QZP|1|S2|G|821
6QZP|1|S2|PSU|822
6QZP|1|S2|PSU|823
6QZP|1|S2|C|824
6QZP|1|S2|A|825
6QZP|1|S2|A|826
6QZP|1|S2|A|827
6QZP|1|S2|G|828
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: