HL_6QZP_133

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCCCGCGCGGGG

Length

14 nucleotides

Bulged bases

6QZP|1|L5|U|513, 6QZP|1|L5|U|514, 6QZP|1|L5|C|515, 6QZP|1|L5|C|517, 6QZP|1|L5|C|519, 6QZP|1|L5|G|642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|U|512
6QZP|1|L5|U|513
6QZP|1|L5|U|514
6QZP|1|L5|C|515
6QZP|1|L5|C|516
6QZP|1|L5|C|517
6QZP|1|L5|G|518
6QZP|1|L5|C|519
6QZP|1|L5|G|642
6QZP|1|L5|C|643
6QZP|1|L5|G|644
6QZP|1|L5|G|645
6QZP|1|L5|G|646
6QZP|1|L5|G|647

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a