HL_6QZP_139

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6QZP|1|S2|C|324, 6QZP|1|S2|C|325, 6QZP|1|S2|C|326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QZP_139 not in the Motif Atlas

Geometric match to HL_5WTI_001

Geometric discrepancy: 0.3539

The information below is about HL_5WTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6QZP|1|S2|C|322
6QZP|1|S2|C|323
6QZP|1|S2|C|324
6QZP|1|S2|C|325
6QZP|1|S2|C|326
6QZP|1|S2|G|327
6QZP|1|S2|U|328
6QZP|1|S2|G|329

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LW

60S ribosomal protein L24