HL_6R5Q_011

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6R5Q|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3114

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6R5Q|1|5|U|204
6R5Q|1|5|C|205
6R5Q|1|5|U|206
6R5Q|1|5|G|207
6R5Q|1|5|A|208
6R5Q|1|5|U|209
6R5Q|1|5|C|210
6R5Q|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein L26

Chain e

eL32