HL_6R5Q_042

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6R5Q|1|5|U|2530, 6R5Q|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_042 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1195

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6R5Q|1|5|G|2523
6R5Q|1|5|U|2524
6R5Q|1|5|U|2525
6R5Q|1|5|C|2526
6R5Q|1|5|A|2527
6R5Q|1|5|G|2528
6R5Q|1|5|A|2529
6R5Q|1|5|U|2530
6R5Q|1|5|C|2531
6R5Q|1|5|C|2532

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34