HL_6R5Q_059

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6R5Q|1|5|A|3876, 6R5Q|1|5|A|3877, 6R5Q|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_059 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0998

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6R5Q|1|5|G|3873
6R5Q|1|5|G|3874
6R5Q|1|5|G|3875
6R5Q|1|5|A|3876
6R5Q|1|5|A|3877
6R5Q|1|5|C|3878
6R5Q|1|5|G|3879
6R5Q|1|5|G|3880
6R5Q|1|5|G|3881
6R5Q|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32