HL_6R5Q_061

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6R5Q|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_061 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1277

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6R5Q|1|5|C|4193
6R5Q|1|5|U|4194
6R5Q|1|5|G|4195
6R5Q|1|5|G|4196
6R5Q|1|5|G|4197
6R5Q|1|5|G|4198
6R5Q|1|5|C|4199
6R5Q|1|5|G|4200
6R5Q|1|5|G|4201

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

Ribosomal protein L10 (Predicted)

Chain b

eL29