HL_6R5Q_076

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6R5Q|1|5|A|4910, 6R5Q|1|5|A|4911, 6R5Q|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_076 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1259

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6R5Q|1|5|C|4906
6R5Q|1|5|G|4907
6R5Q|1|5|G|4908
6R5Q|1|5|A|4909
6R5Q|1|5|A|4910
6R5Q|1|5|A|4911
6R5Q|1|5|G|4912
6R5Q|1|5|G|4913
6R5Q|1|5|G|4914
6R5Q|1|5|G|4915

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13