3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUAGACGAC
Length
9 nucleotides
Bulged bases
6R5Q|1|5|U|4976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6R5Q_077 not in the Motif Atlas
Homologous match to HL_8C3A_071
Geometric discrepancy: 0.1092
The information below is about HL_8C3A_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.4
Basepair signature
cWW-cSW-F-F-F-cWW
Number of instances in this motif group
9

Unit IDs

6R5Q|1|5|G|4975
6R5Q|1|5|U|4976
6R5Q|1|5|A|4977
6R5Q|1|5|G|4978
6R5Q|1|5|A|4979
6R5Q|1|5|C|4980
6R5Q|1|5|G|4981
6R5Q|1|5|A|4982
6R5Q|1|5|C|4983

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain P
uL22

Coloring options:


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