HL_6R5Q_091

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_091 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3641

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6R5Q|1|K|G|377
6R5Q|1|K|U|378
6R5Q|1|K|C|379
6R5Q|1|K|G|380
6R5Q|1|K|C|381
6R5Q|1|K|C|382
6R5Q|1|K|G|383
6R5Q|1|K|U|384
6R5Q|1|K|G|385
6R5Q|1|K|C|386
6R5Q|1|K|C|387

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11