HL_6R5Q_103

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R5Q_103 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1149

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R5Q|1|K|C|994
6R5Q|1|K|G|995
6R5Q|1|K|A|996
6R5Q|1|K|A|997
6R5Q|1|K|A|998
6R5Q|1|K|G|999

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain LL

eS26

Chain QQ

ribosomal protein uS15