HL_6R6G_003

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_003 not in the Motif Atlas

Homologous match to HL_5WT1_003

Geometric discrepancy: 0.1293

The information below is about HL_5WT1_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6R6G|1|2|G|53
6R6G|1|2|U|54
6R6G|1|2|U|55
6R6G|1|2|C|56
6R6G|1|2|G|57
6R6G|1|2|A|58
6R6G|1|2|A|59
6R6G|1|2|A|60
6R6G|1|2|C|61

Current chains

Chain 2

P-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain J

Ribosomal protein L11

Chain o

eL42