HL_6R6G_011

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6R6G|1|5|C|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_011 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2998

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6R6G|1|5|U|198
6R6G|1|5|C|199
6R6G|1|5|U|200
6R6G|1|5|G|201
6R6G|1|5|A|202
6R6G|1|5|U|203
6R6G|1|5|C|204
6R6G|1|5|G|205

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein L26

Chain e

eL32