HL_6R6G_031

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6R6G|1|5|G|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_031 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3696

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6R6G|1|5|C|1353
6R6G|1|5|U|1354
6R6G|1|5|G|1355
6R6G|1|5|G|1356
6R6G|1|5|U|1357
6R6G|1|5|G|1358
6R6G|1|5|U|1359
6R6G|1|5|G|1360

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain b

eL29