HL_6R6G_038
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_038 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1865
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6R6G|1|5|A|1769
6R6G|1|5|C|1770
6R6G|1|5|G|1771
6R6G|1|5|A|1772
6R6G|1|5|G|1773
6R6G|1|5|A|1774
6R6G|1|5|A|1775
6R6G|1|5|C|1776
6R6G|1|5|U|1777
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain P
- uL22
- Chain R
- 60S ribosomal protein L19
- Chain d
- eL31
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