HL_6R6G_042
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 6R6G|1|5|U|1923, 6R6G|1|5|C|1924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_042 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1784
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6R6G|1|5|G|1916
6R6G|1|5|U|1917
6R6G|1|5|U|1918
6R6G|1|5|C|1919
6R6G|1|5|A|1920
6R6G|1|5|G|1921
6R6G|1|5|A|1922
6R6G|1|5|U|1923
6R6G|1|5|C|1924
6R6G|1|5|C|1925
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain X
- uL23
- Chain g
- eL34
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