HL_6R6G_045
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 6R6G|1|5|C|2020, 6R6G|1|5|U|2024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_045 not in the Motif Atlas
- Homologous match to HL_8C3A_037
- Geometric discrepancy: 0.3623
- The information below is about HL_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6R6G|1|5|G|2017
6R6G|1|5|U|2018
6R6G|1|5|U|2019
6R6G|1|5|C|2020
6R6G|1|5|U|2021
6R6G|1|5|C|2022
6R6G|1|5|U|2023
6R6G|1|5|U|2024
6R6G|1|5|U|2025
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain U
- 60S ribosomal protein L22
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