HL_6R6G_048

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

6R6G|1|5|C|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_048 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1005

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6R6G|1|5|C|2131
6R6G|1|5|C|2132
6R6G|1|5|U|2133
6R6G|1|5|U|2134
6R6G|1|5|G|2135

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain p

ribosomal protein eL43