HL_6R6G_055

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6R6G|1|5|C|2371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_055 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2749

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6R6G|1|5|C|2366
6R6G|1|5|G|2367
6R6G|1|5|C|2368
6R6G|1|5|G|2369
6R6G|1|5|G|2370
6R6G|1|5|C|2371
6R6G|1|5|G|2372

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15