HL_6R6G_059

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6R6G|1|5|A|2574, 6R6G|1|5|A|2575, 6R6G|1|5|C|2576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_059 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.137

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|G|2571
6R6G|1|5|G|2572
6R6G|1|5|G|2573
6R6G|1|5|A|2574
6R6G|1|5|A|2575
6R6G|1|5|C|2576
6R6G|1|5|G|2577
6R6G|1|5|G|2578
6R6G|1|5|G|2579
6R6G|1|5|C|2580

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32