HL_6R6G_060

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6R6G|1|5|G|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_060 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1666

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6R6G|1|5|C|2763
6R6G|1|5|U|2764
6R6G|1|5|G|2765
6R6G|1|5|G|2766
6R6G|1|5|G|2767
6R6G|1|5|G|2768
6R6G|1|5|C|2769
6R6G|1|5|G|2770
6R6G|1|5|G|2771

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

Ribosomal protein L10 (Predicted)

Chain b

eL29