HL_6R6G_069

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_069 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.177

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6R6G|1|5|U|3067
6R6G|1|5|U|3068
6R6G|1|5|G|3069
6R6G|1|5|U|3070
6R6G|1|5|U|3071
6R6G|1|5|C|3072
6R6G|1|5|A|3073

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3