HL_6R6G_071

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_071 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.1191

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6R6G|1|5|C|3173
6R6G|1|5|G|3174
6R6G|1|5|A|3175
6R6G|1|5|G|3176
6R6G|1|5|A|3177
6R6G|1|5|G|3178

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain m

60S ribosomal protein L40