HL_6R6G_073

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6R6G|1|5|G|3264, 6R6G|1|5|C|3268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1133

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|C|3258
6R6G|1|5|U|3259
6R6G|1|5|G|3260
6R6G|1|5|A|3261
6R6G|1|5|A|3262
6R6G|1|5|C|3263
6R6G|1|5|G|3264
6R6G|1|5|C|3265
6R6G|1|5|C|3266
6R6G|1|5|U|3267
6R6G|1|5|C|3268
6R6G|1|5|U|3269
6R6G|1|5|A|3270
6R6G|1|5|A|3271
6R6G|1|5|G|3272

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

60S ribosomal protein L13a

Chain m

60S ribosomal protein L40