HL_6R6G_075

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6R6G|1|5|A|3390, 6R6G|1|5|A|3391, 6R6G|1|5|G|3394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_075 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1568

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6R6G|1|5|C|3386
6R6G|1|5|G|3387
6R6G|1|5|G|3388
6R6G|1|5|A|3389
6R6G|1|5|A|3390
6R6G|1|5|A|3391
6R6G|1|5|G|3392
6R6G|1|5|G|3393
6R6G|1|5|G|3394
6R6G|1|5|G|3395

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

60S ribosomal protein L13a