HL_6R6G_076

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6R6G|1|5|U|3456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_076 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6R6G|1|5|G|3455
6R6G|1|5|U|3456
6R6G|1|5|A|3457
6R6G|1|5|G|3458
6R6G|1|5|A|3459
6R6G|1|5|C|3460
6R6G|1|5|G|3461
6R6G|1|5|A|3462
6R6G|1|5|C|3463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22