HL_6R6G_086

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_086 not in the Motif Atlas

Homologous match to HL_1MFQ_001

Geometric discrepancy: 0.2013

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6R6G|1|AF|G|146
6R6G|1|AF|G|147
6R6G|1|AF|G|148
6R6G|1|AF|A|149
6R6G|1|AF|G|150
6R6G|1|AF|C|151

Current chains

Chain AF

7S RNA

Nearby chains

Chain AC

Signal recognition particle subunit SRP19