HL_6R6G_089
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 6R6G|1|K|C|73, 6R6G|1|K|G|74, 6R6G|1|K|G|75, 6R6G|1|K|U|76
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6R6G_089 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3352
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6R6G|1|K|C|69
6R6G|1|K|G|70
6R6G|1|K|G|71
6R6G|1|K|C|72
6R6G|1|K|C|73
6R6G|1|K|G|74
6R6G|1|K|G|75
6R6G|1|K|U|76
6R6G|1|K|A|77
6R6G|1|K|C|78
6R6G|1|K|A|79
6R6G|1|K|G|80
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain W
- Ribosomal protein L24
- Chain z
- 40S ribosomal protein S6
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