HL_6R6G_097

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6R6G|1|K|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6R6G_097 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2128

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6R6G|1|K|C|462
6R6G|1|K|C|463
6R6G|1|K|A|464
6R6G|1|K|A|465
6R6G|1|K|G|466
6R6G|1|K|G|467

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AD

Signal recognition particle 9 kDa protein

Chain AE

Signal recognition particle 14 kDa protein

Chain V

eL14

Chain z

40S ribosomal protein S6